These tutorials are aimed at the novice / intermediate bioinformatician. This is not the gospel. There are probably better ways to do things. If you find them use them.

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Tutorials

• Linux 101
• ATAC-seq: SRA to peak calling
• Workflow management: Snakemake
• Version control: Github
• Gene set enrichment: MAGMA
• Build a basic container for R

Extra Material

• Additional tools
• Useful Links

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Thanks to:

• Heath O’Brien for help with content and for his tutorials introducing me to many of the concepts here.
• Karl Broman for the excellent tutorial on how to build a website using GitHub pages.

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The source for this tutorial is on github.